No, damage would not be covered by the Nissan warranty. Can tell you the headliner has to be pulled in that area in order to do the repair/replace the antenna base itself. Parts, base and antenna and repair/install total will run you about $275+- at a dealership is my guess.
If the antenna mast metal screw in male fitting has just snapped off and there is no damage to the base then you can probably get the broken mast metal male end out of the base's female fitting and then just replace the damaged antenna mast. Nissan antenna mast, new costs about $26 on eBAY.
You do say though, the part that the antenna screws into is damaged. Is the metal female end in the antenna base still connected to wires and just the plastic base itself is cracked/broken? If so you could just buy a functioning aftermarket shark fin, install same and hide the damaged antenna base. Install of the shark fin is easy, easy and costs about $70. Look here -->
VG Shark Fin Antenna - What Is It? I recently contacted the vendor and he still is offering the fin and can provide exact color matching for the 2011 and older Muranos. For you, with a damaged base, you would still have to have an undamaged, wire connected female fitting (cracked/mangled base is ok as it will be hidden/covered) and my guess is you do... See pic below.
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